STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102735530ras-GEF domain-containing family member 1B-like. (472 aa)    
Predicted Functional Partners:
LOC102738372
HAUS augmin-like complex subunit 8-like.
      
 0.718
ARHGAP5
Rho GTPase-activating protein 5 isoform X1.
      
 0.655
RABGEF1
Rab5 GDP/GTP exchange factor.
      
 0.595
LINGO1
Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1.
   
  
 0.589
LOC102726862
UDP-xylose and UDP-N-acetylglucosamine transporter-like.
      
 0.508
KIF13B
Kinesin-like protein KIF13B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.504
HSPBAP1
HSPB1-associated protein 1.
      
 0.501
PPP2R2C
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform.
   
  
 0.499
LOC102731925
Serine/threonine-protein kinase 24-like.
      
 0.487
ITIH5
Inter-alpha-trypsin inhibitor heavy chain H5.
      
 0.487
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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