STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102744795Collagen alpha-1(V) chain-like. (132 aa)    
Predicted Functional Partners:
COL5A1
Collagen alpha-1(V) chain-like.
 
      0.900
LOC102750213
Collagen alpha-1(XXVII) chain-like.
 
      0.899
LOC102742903
Collagen alpha-1(I) chain-like.
 
      0.834
COL7A1
Collagen alpha-1(VII) chain-like.
 
      0.762
COL9A1
Collagen alpha-1(IX) chain.
 
      0.657
COL10A1
Collagen alpha-1(X) chain.
 
      0.623
COL2A1
Collagen alpha-1(II) chain isoform X1.
 
      0.602
COL9A3
Collagen alpha-3(IX) chain.
 
      0.601
COL8A1
Collagen alpha-1(VIII) chain isoform X1.
 
      0.579
COL8A2
Collagen alpha-2(VIII) chain.
 
      0.546
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.