STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102730200Sorting nexin-12-like. (55 aa)    
Predicted Functional Partners:
VPS35
Vacuolar protein sorting-associated protein 35.
   
 0.949
VPS26A
Vacuolar protein sorting-associated protein 26A isoform X1.
    
 0.905
VPS26B
Vacuolar protein sorting-associated protein 26B.
   
 0.889
VPS29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.748
WLS
Protein wntless homolog isoform X1.
    
 0.695
SNX15
Sorting nexin-15.
     
 0.677
LOC102741980
Ubiquitin carboxyl-terminal hydrolase 10-like.
    
 0.676
RPS6KC1
Ribosomal protein S6 kinase delta-1 isoform X1.
     
 0.577
SNX5
Sorting nexin; Involved in several stages of intracellular trafficking.
    
 
 0.507
SNX27
Sorting nexin-27.
    
 
 0.505
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.