STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COMPCartilage oligomeric matrix protein. (728 aa)    
Predicted Functional Partners:
CD47
Leukocyte surface antigen CD47.
   
 
 0.916
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.903
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.898
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.888
LOC102749767
Integrin alpha-IIb-like.
    
  0.885
THBS3
Thrombospondin-3 isoform X1.
  
 
0.840
MATN4
Matrilin-4 isoform X2.
   
 0.829
LOC102744445
Integrin beta; Belongs to the integrin beta chain family.
    
 0.821
ITGB7
Integrin beta; Belongs to the integrin beta chain family.
    
 0.820
ITGA7
Integrin alpha-7; Belongs to the integrin alpha chain family.
    
 0.815
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.