STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102743250Transcription factor GATA-5-like. (300 aa)    
Predicted Functional Partners:
NKX2-5
Homeobox protein Nkx-2.5.
   
 0.807
LOC102741543
Zinc finger protein ZFPM2-like.
    
 0.702
LOC102725943
Nuclear factor of activated T-cells, cytoplasmic 2-like.
    
 0.676
SRF
Serum response factor.
    
 0.649
FOXA1
Hepatocyte nuclear factor 3-alpha.
    
 0.645
LOC102727186
Heart- and neural crest derivatives-expressed protein 2-like.
   
 0.593
LOC102742062
T-box transcription factor TBX5-like.
   
 0.576
LMCD1
LIM and cysteine-rich domains protein 1.
    
 0.558
NFATC1
Nuclear factor of activated T-cells, cytoplasmic 1.
    
 0.543
EP300
Histone acetyltransferase p300.
    
 0.540
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.