STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF6E3 ubiquitin-protein ligase RNF6 isoform X1. (683 aa)    
Predicted Functional Partners:
UBA52
ubiquitin-60S ribosomal protein L40 isoform X3.
    
 0.763
LOC102736755
Lysophospholipase-like protein 1-like.
   
  
 0.661
LARP6
La-related protein 6.
      
 0.654
WASF3
wiskott-Aldrich syndrome protein family member 3-like.
      
 0.647
LOC102732459
E3 ubiquitin-protein ligase NRDP1-like.
    
 
 0.644
SLC35D3
Solute carrier family 35 member D3.
      
 0.632
LOC102726900
Mothers against decapentaplegic homolog 7-like.
   
 0.629
LOC102750017
Mothers against decapentaplegic homolog 6-like.
   
 0.629
LOC102750322
polyubiquitin-B-like.
    
  0.616
LOC102729636
polyubiquitin-B-like.
    
  0.616
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.