STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102731343Calcium homeostasis endoplasmic reticulum protein-like. (455 aa)    
Predicted Functional Partners:
RBM17
Splicing factor 45.
   
 0.903
SF3A2
Splicing factor 3A subunit 2.
   
 0.831
RAVER1
Ribonucleoprotein PTB-binding 1.
   
    0.810
PHF5A
PHD finger-like domain-containing protein 5A.
   
 0.796
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like.
   
 0.775
SF3A1
Splicing factor 3A subunit 1.
   
 0.745
DHX8
ATP-dependent RNA helicase DHX8.
   
 0.731
PUF60
poly(U)-binding-splicing factor PUF60 isoform X2.
   
 0.722
LOC102738980
Probable ATP-dependent RNA helicase DDX46-like.
   
 
 0.692
SF3B4
Splicing factor 3B subunit 4 isoform X1.
   
 0.688
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.