PNKD protein (Leptonychotes weddellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNKD

Probable hydrolase PNKD isoform X1. (385 aa)

Predicted Functional Partners:

SUOX

0.901

SLC35D3

0.769

LOC102729131

0.667

TMEM230

0.667

LOC102736357

0.638

PECR

0.629

PRRT2

0.586

PCDH10

0.582

GLOD4

0.561

LOC102731442

0.528

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLOD4	LOC102731442	A0A2U3YJQ4	A0A2U3XF19	Glyoxalase domain-containing protein 4.	methylmalonyl-CoA epimerase, mitochondrial-like.	0.553
GLOD4	LOC102736357	A0A2U3YJQ4	A0A2U3XQX3	Glyoxalase domain-containing protein 4.	Cytochrome b5 reductase 4-like isoform X1.	0.645
GLOD4	PNKD	A0A2U3YJQ4	A0A2U3Z3M1	Glyoxalase domain-containing protein 4.	Probable hydrolase PNKD isoform X1.	0.561
LOC102729131	PCDH10	A0A2U3XS78	A0A2U3X6Y0	Transmembrane protein 230-like.	Protocadherin-10-like.	0.493
LOC102729131	PNKD	A0A2U3XS78	A0A2U3Z3M1	Transmembrane protein 230-like.	Probable hydrolase PNKD isoform X1.	0.667
LOC102729131	SLC35D3	A0A2U3XS78	A0A2U3XU45	Transmembrane protein 230-like.	Solute carrier family 35 member D3.	0.657
LOC102731442	GLOD4	A0A2U3XF19	A0A2U3YJQ4	methylmalonyl-CoA epimerase, mitochondrial-like.	Glyoxalase domain-containing protein 4.	0.553
LOC102731442	LOC102736357	A0A2U3XF19	A0A2U3XQX3	methylmalonyl-CoA epimerase, mitochondrial-like.	Cytochrome b5 reductase 4-like isoform X1.	0.645
LOC102731442	PECR	A0A2U3XF19	A0A2U3XUD2	methylmalonyl-CoA epimerase, mitochondrial-like.	Peroxisomal trans-2-enoyl-CoA reductase.	0.426
LOC102731442	PNKD	A0A2U3XF19	A0A2U3Z3M1	methylmalonyl-CoA epimerase, mitochondrial-like.	Probable hydrolase PNKD isoform X1.	0.528
LOC102736357	GLOD4	A0A2U3XQX3	A0A2U3YJQ4	Cytochrome b5 reductase 4-like isoform X1.	Glyoxalase domain-containing protein 4.	0.645
LOC102736357	LOC102731442	A0A2U3XQX3	A0A2U3XF19	Cytochrome b5 reductase 4-like isoform X1.	methylmalonyl-CoA epimerase, mitochondrial-like.	0.645
LOC102736357	PECR	A0A2U3XQX3	A0A2U3XUD2	Cytochrome b5 reductase 4-like isoform X1.	Peroxisomal trans-2-enoyl-CoA reductase.	0.569
LOC102736357	PNKD	A0A2U3XQX3	A0A2U3Z3M1	Cytochrome b5 reductase 4-like isoform X1.	Probable hydrolase PNKD isoform X1.	0.638
LOC102736357	SUOX	A0A2U3XQX3	A0A2U3XBW0	Cytochrome b5 reductase 4-like isoform X1.	Sulfite oxidase, mitochondrial.	0.952
PCDH10	LOC102729131	A0A2U3X6Y0	A0A2U3XS78	Protocadherin-10-like.	Transmembrane protein 230-like.	0.493
PCDH10	PNKD	A0A2U3X6Y0	A0A2U3Z3M1	Protocadherin-10-like.	Probable hydrolase PNKD isoform X1.	0.582
PCDH10	SLC35D3	A0A2U3X6Y0	A0A2U3XU45	Protocadherin-10-like.	Solute carrier family 35 member D3.	0.582
PCDH10	TMEM230	A0A2U3X6Y0	A0A2U3XVS6	Protocadherin-10-like.	Transmembrane protein 230 isoform X1.	0.493
PECR	LOC102731442	A0A2U3XUD2	A0A2U3XF19	Peroxisomal trans-2-enoyl-CoA reductase.	methylmalonyl-CoA epimerase, mitochondrial-like.	0.426