STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMWDDystrophia myotonica WD repeat-containing protein. (576 aa)    
Predicted Functional Partners:
LOC102725641
Ubiquitin carboxyl-terminal hydrolase 12-B-like; Belongs to the peptidase C19 family.
   
 0.930
WDR48
WD repeat-containing protein 48 isoform X1.
    
 0.910
USP1
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
    
 0.740
USP38
Ubiquitin carboxyl-terminal hydrolase 38; Belongs to the peptidase C19 family.
    
 0.740
LOC102727528
Ubiquitin carboxyl-terminal hydrolase 35-like; Belongs to the peptidase C19 family.
    
 0.740
USP35
Ubiquitin carboxyl-terminal hydrolase 35-like; Belongs to the peptidase C19 family.
    
 0.740
SIX5
Homeobox protein SIX5.
      
 0.707
FBXO46
F-box only protein 46.
      
 0.681
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.581
MBLAC1
Metallo-beta-lactamase domain-containing protein 1.
      
 0.580
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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