STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX41Probable ATP-dependent RNA helicase DDX41-like. (512 aa)    
Predicted Functional Partners:
TRIM21
E3 ubiquitin-protein ligase TRIM21.
    
 0.954
LOC102739685
Probable ATP-dependent RNA helicase DDX41-like.
 
     0.919
CDC40
pre-mRNA-processing factor 17.
    
 0.832
PPWD1
Peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1.
   
 0.812
NKAPL
NKAP-like protein.
    
  0.690
MB21D1
Cyclic GMP-AMP synthase.
      
 0.669
DHX33
Putative ATP-dependent RNA helicase DHX33-like isoform X1.
   
 0.640
DDX39A
ATP-dependent RNA helicase DDX39A.
  
 
0.615
DDX39B
Spliceosome RNA helicase DDX39B isoform X1.
  
 
0.614
DHX38
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.605
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.