STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102734352rRNA-processing protein FCF1 homolog. (186 aa)    
Predicted Functional Partners:
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
UTP3
Something about silencing protein 10.
   
 0.999
EMG1
Ribosomal RNA small subunit methyltransferase NEP1.
   
 0.999
WDR46
WD repeat-containing protein 46 isoform X1.
   
 0.999
UTP11L
Probable U3 small nucleolar RNA-associated protein 11.
   
 0.999
UTP14A
U3 small nucleolar RNA-associated protein 14 homolog A isoform X1.
   
 0.998
RPS9
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 0.996
LOC102749320
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.996
NOP58
Nucleolar protein 58 isoform X1.
   
 0.995
IMP3
U3 small nucleolar ribonucleoprotein protein IMP3.
   
 0.995
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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