STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102731549GA-binding protein alpha chain-like. (204 aa)    
Predicted Functional Partners:
GABPB1
GA-binding protein subunit beta-1 isoform X1.
    
 0.998
LOC102747932
Friend leukemia integration 1 transcription factor-like.
 
      0.899
LOC102743667
Transcriptional regulator ERG-like.
 
      0.888
METTL23
Methyltransferase-like protein 23.
      
 0.704
LOC102741490
Uncharacterized protein C10orf12 homolog.
    
 
 0.583
ZNF143
Zinc finger protein 143 isoform X1.
   
 
 0.494
SCNM1
Sodium channel modifier 1.
      
 0.493
TFAM
Transcription factor A, mitochondrial isoform X1.
   
 
 0.478
PPIH
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
      
 0.478
FOXA1
Hepatocyte nuclear factor 3-alpha.
      
 0.474
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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