STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CELF3CUGBP Elav-like family member 3 isoform X1. (463 aa)    
Predicted Functional Partners:
MEX3B
RNA-binding protein MEX3B isoform X1.
      
 0.744
LOC102728335
RNA-binding protein Nova-1-like isoform X1.
      
 0.673
RBFOX3
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
  
 0.655
FTSJ3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
      
 0.578
PTBP2
Polypyrimidine tract-binding protein 2 isoform X2.
      
 0.541
PTBP1
Polypyrimidine tract-binding protein 1 isoform X1.
      
 0.502
BPTF
Nucleosome-remodeling factor subunit BPTF isoform X2.
      
 0.495
POLR2E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1.
      
 0.493
POLRMT
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
      
 0.493
SRSF1
Serine/arginine-rich splicing factor 1 isoform X1.
    
 
 0.488
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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