STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102730732Sarcalumenin-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (379 aa)    
Predicted Functional Partners:
LOC102746494
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 0.589
RCN3
Reticulocalbin-3.
      
 0.581
MICALL1
MICAL-like protein 1.
    
 
 0.576
ATP2A3
Sarcoplasmic/endoplasmic reticulum calcium ATPase 3; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.
   
  
 0.564
PTRF
Polymerase I and transcript release factor isoform X1.
   
  
 0.539
TNNT3
Troponin T, fast skeletal muscle.
   
  
 0.529
SMIM20
Small integral membrane protein 20.
   
    0.508
ATP2C2
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
   
  
 0.503
ATP2C1
Calcium-transporting ATPase type 2C member 1-like isoform X1; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.
   
  
 0.503
LOC102732520
Calcium-transporting ATPase type 2C member 1-like; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.
   
  
 0.503
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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