STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTPRCAPProtein tyrosine phosphatase receptor type C-associated protein. (102 aa)    
Predicted Functional Partners:
LY6G5B
Lymphocyte antigen 6 complex locus protein G5b.
      
 0.769
LTB
Lymphotoxin-beta isoform X1; Belongs to the tumor necrosis factor family.
   
  
 0.601
TBC1D10C
Carabin-like.
   
  
 0.482
SLC30A5
Zinc transporter 5.
      
 0.481
TSPAN13
Tetraspanin-13; Belongs to the tetraspanin (TM4SF) family.
      
 0.474
PVRIG
Transmembrane protein PVRIG.
   
    0.414
KANK3
KN motif and ankyrin repeat domain-containing protein 3.
      
 0.404
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.