STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPA33LOW QUALITY PROTEIN: glycoprotein A33 (Transmembrane). (265 aa)    
Predicted Functional Partners:
TM4SF20
Transmembrane 4 L6 family member 20.
      
 0.719
GJB3
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.549
DMTN
Dematin isoform X1.
      
 0.542
XKR6
XK-related protein.
      
 0.539
GJB5
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.527
FAM194A
Protein FAM194A.
    
 0.496
STEAP1
Metalloreductase STEAP1 isoform X2.
      
 0.495
RANBP2
E3 SUMO-protein ligase RanBP2.
    
 0.486
NADK
NAD kinase.
      
 0.451
CSPG4
Chondroitin sulfate proteoglycan 4.
      
 0.412
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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