LOC102744616 protein (Leptonychotes weddellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102744616

N-acetyltransferase ESCO1-like. (515 aa)

Predicted Functional Partners:

SMC3

0.990

PDS5A

0.906

SMC1A

0.901

PCNA

0.901

SMC4

0.899

PDS5B

0.896

SMC5

0.866

SMC6

0.851

RAD21

0.848

RAD21L1

0.848

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102744616	PCNA	A0A2U3Z9C9	A0A2U3XVX8	N-acetyltransferase ESCO1-like.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.901
LOC102744616	PDS5A	A0A2U3Z9C9	A0A2U3XM21	N-acetyltransferase ESCO1-like.	Sister chromatid cohesion protein PDS5 homolog A isoform X2.	0.906
LOC102744616	PDS5B	A0A2U3Z9C9	A0A2U3XC24	N-acetyltransferase ESCO1-like.	Sister chromatid cohesion protein PDS5 homolog B isoform X1.	0.896
LOC102744616	RAD21	A0A2U3Z9C9	A0A2U3XSB3	N-acetyltransferase ESCO1-like.	Double-strand-break repair protein rad21 homolog.	0.848
LOC102744616	RAD21L1	A0A2U3Z9C9	A0A2U3YQI5	N-acetyltransferase ESCO1-like.	Double-strand-break repair protein rad21-like protein 1 isoform X1.	0.848
LOC102744616	SMC1A	A0A2U3Z9C9	A0A2U3XEV5	N-acetyltransferase ESCO1-like.	Structural maintenance of chromosomes protein.	0.901
LOC102744616	SMC3	A0A2U3Z9C9	A0A2U3XWK0	N-acetyltransferase ESCO1-like.	Structural maintenance of chromosomes protein.	0.990
LOC102744616	SMC4	A0A2U3Z9C9	A0A2U3YF50	N-acetyltransferase ESCO1-like.	Structural maintenance of chromosomes protein.	0.899
LOC102744616	SMC5	A0A2U3Z9C9	A0A2U3XDM8	N-acetyltransferase ESCO1-like.	Structural maintenance of chromosomes protein 5-like isoform X2.	0.866
LOC102744616	SMC6	A0A2U3Z9C9	A0A2U3XNI3	N-acetyltransferase ESCO1-like.	Structural maintenance of chromosomes protein 6.	0.851
PCNA	LOC102744616	A0A2U3XVX8	A0A2U3Z9C9	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	N-acetyltransferase ESCO1-like.	0.901
PCNA	RAD21	A0A2U3XVX8	A0A2U3XSB3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Double-strand-break repair protein rad21 homolog.	0.716
PCNA	RAD21L1	A0A2U3XVX8	A0A2U3YQI5	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Double-strand-break repair protein rad21-like protein 1 isoform X1.	0.716
PCNA	SMC4	A0A2U3XVX8	A0A2U3YF50	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Structural maintenance of chromosomes protein.	0.592
PDS5A	LOC102744616	A0A2U3XM21	A0A2U3Z9C9	Sister chromatid cohesion protein PDS5 homolog A isoform X2.	N-acetyltransferase ESCO1-like.	0.906
PDS5A	PDS5B	A0A2U3XM21	A0A2U3XC24	Sister chromatid cohesion protein PDS5 homolog A isoform X2.	Sister chromatid cohesion protein PDS5 homolog B isoform X1.	0.827
PDS5A	RAD21	A0A2U3XM21	A0A2U3XSB3	Sister chromatid cohesion protein PDS5 homolog A isoform X2.	Double-strand-break repair protein rad21 homolog.	0.936
PDS5A	RAD21L1	A0A2U3XM21	A0A2U3YQI5	Sister chromatid cohesion protein PDS5 homolog A isoform X2.	Double-strand-break repair protein rad21-like protein 1 isoform X1.	0.908
PDS5A	SMC1A	A0A2U3XM21	A0A2U3XEV5	Sister chromatid cohesion protein PDS5 homolog A isoform X2.	Structural maintenance of chromosomes protein.	0.975
PDS5A	SMC3	A0A2U3XM21	A0A2U3XWK0	Sister chromatid cohesion protein PDS5 homolog A isoform X2.	Structural maintenance of chromosomes protein.	0.975