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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_00127Protein-tyrosine phosphatase. (267 aa)    
Predicted Functional Partners:
C821_01083
Hypothetical protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.936
C821_00425
Protein-tyrosine phosphatase.
  
  
 
0.929
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
  0.870
C821_00469
Protein-tyrosine phosphatase.
  
  
 
0.868
tadA
Cytosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
      0.816
C821_01231
Hypothetical protein.
    
   0.740
C821_00779
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.739
C821_00126
Hypothetical protein.
       0.531
ldh
L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate.
    
   0.453
ldh-2
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
    
   0.453
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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