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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_00164Polar amino acid transport system ATP-binding protein. (251 aa)    
Predicted Functional Partners:
C821_00163
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
 0.998
C821_00139
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
 0.992
C821_01260
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
 0.991
C821_01259
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
 0.988
C821_00576
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
 0.972
C821_00966
Polar amino acid transport system substrate-binding protein.
 
 0.899
C821_01261
Hypothetical protein.
 
 0.885
C821_00480
ATP-binding cassette, subfamily B, bacterial.
 
     
0.881
C821_00970
ATP-binding cassette, subfamily B, bacterial; Overlaps another CDS with the same product name.
 
     
0.861
C821_00578
Polar amino acid transport system substrate-binding protein.
 
 0.839
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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