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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_00732YbgI/family dinuclear metal center protein. (265 aa)    
Predicted Functional Partners:
C821_00731
Hypothetical protein.
  
 0.984
C821_00819
Pyruvate kinase; Belongs to the pyruvate kinase family.
 
 
  0.946
C821_00733
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
    0.866
C821_00730
7,8-dihydro-8-oxoguanine triphosphatase.
    
  0.749
C821_00915
ADP-ribose pyrophosphatase.
   
  0.607
C821_00729
Hypothetical protein.
       0.567
C821_00630
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
 
  0.563
C821_00595
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
    0.503
C821_01969
Hypothetical protein.
    
  0.476
C821_00977
Hypothetical protein; Belongs to the Nudix hydrolase family.
    
  0.459
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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