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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addAHelicase-exonuclease AddAB, AddA subunit; ATP-dependent DNA helicase. (1199 aa)    
Predicted Functional Partners:
C821_00751
Hypothetical protein.
 
 
 0.994
C821_00750
Helicase-exonuclease AddAB, AddB subunit.
 
 
 0.993
C821_00899
RecD/TraA family helicase.
  
 
 0.820
C821_00907
Hypothetical protein.
  
 
 0.820
C821_00908
Exodeoxyribonuclease V alpha subunit.
  
 
 0.820
dinG
Exonuclease, DNA polymerase III, epsilon subunit; 3'-5' exonuclease.
     
 0.817
C821_00754
Hypothetical protein.
       0.745
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
  
 
 0.656
C821_00397
DNA helicase II/ATP-dependent DNA helicase PcrA.
 
 
0.652
C821_00396
DNA helicase II/ATP-dependent DNA helicase PcrA.
 
 
0.651
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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