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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_00998Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (283 aa)    
Predicted Functional Partners:
C821_00999
MreB/Mrl family cell shape determining protein.
 
 
 0.987
C821_01036
MreB/Mrl family cell shape determining protein.
 
 
 0.960
C821_01660
Hypothetical protein.
 
 
 0.917
C821_00930
Penicillin-binding protein 2B.
 
 
 0.879
C821_01000
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.871
C821_00929
Hypothetical protein.
 
 
 0.860
C821_00991
Penicillin-binding protein 2B.
  
 
 0.837
C821_00997
Rod shape-determining protein MreD.
       0.813
murC
UDP-N-acetylmuramate-L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.677
C821_01031
Rod shape determining protein RodA; Belongs to the SEDS family.
 
  
 0.675
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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