Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C821_01144Hypothetical protein. (285 aa)    
Predicted Functional Partners:
C821_01896
Hypothetical protein.
  
     0.611
C821_00819
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
  0.598
C821_01141
Hypothetical protein.
  
     0.598
C821_01145
Hypothetical protein.
       0.567
C821_01120
Hypothetical protein.
  
     0.498
C821_01019
Hypothetical protein.
  
     0.488
C821_00956
RIP metalloprotease RseP.
      
 0.413
C821_00312
Hypothetical protein.
  
     0.409
C821_01143
Hypothetical protein.
       0.407
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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