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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_01236Hypothetical protein. (130 aa)    
Predicted Functional Partners:
C821_01237
tRNA (cytidine(34)-2'-O)-methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.832
C821_00121
Hypothetical protein.
  
     0.769
C821_01235
Hypothetical protein.
       0.759
C821_01238
Hypothetical protein.
 
     0.718
C821_01213
Hypothetical protein.
  
     0.701
C821_01058
Hypothetical protein.
  
     0.687
C821_00813
Segregation and condensation protein B.
  
     0.675
C821_00120
Hypothetical protein.
  
     0.673
C821_00797
Hypothetical protein.
 
    0.664
C821_01290
Hypothetical protein.
  
     0.643
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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