STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_01268Hypothetical protein. (261 aa)    
Predicted Functional Partners:
C821_01395
Sigma-70 family RNA polymerase sigma factor.
  
 0.843
C821_01752
Hypothetical protein.
  
 0.714
C821_00336
Hypothetical protein.
 
 
 
0.681
C821_00308
Hypothetical protein.
 
 
  0.637
C821_01267
Hypothetical protein.
 
     0.559
C821_01269
Hypothetical protein.
       0.517
C821_01265
ATP-binding cassette, subfamily B, bacterial.
       0.497
C821_01266
ATP-binding cassette, subfamily C, bacterial.
       0.497
C821_00580
Hypothetical protein.
  
  
  0.454
C821_00408
YSIRK family gram-positive signal peptide.
 
 
 0.446
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.