Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C821_01288Hypothetical protein. (110 aa)    
Predicted Functional Partners:
C821_01287
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
    
  0.881
C821_00500
Zinc/manganese transport system ATP-binding protein.
  
  
  0.840
C821_00501
Zinc/manganese transport system permease.
  
  
  0.832
C821_00139
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
   
 
 0.816
C821_00163
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
   
 
 0.816
C821_01284
Integral membrane protein.
       0.805
C821_01285
TIGR01457 family HAD hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
       0.805
C821_01286
Hypothetical protein.
       0.805
C821_01148
YaeC family lipoprotein; Belongs to the nlpA lipoprotein family.
  
 
 0.788
C821_01790
Peptide/nickel transport system substrate-binding protein.
   
 
  0.762
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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