Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C821_01337Hypothetical protein. (269 aa)    
Predicted Functional Partners:
C821_01338
Hypothetical protein.
       0.718
C821_00554
Hypothetical protein.
  
     0.669
C821_01704
Hypothetical protein.
  
     0.661
C821_01339
Hypothetical protein.
       0.616
C821_00083
Hypothetical protein.
  
     0.598
C821_00082
Hypothetical protein.
  
     0.572
C821_01334
Hypothetical protein.
 
     0.534
C821_01876
Hypothetical protein.
  
     0.508
C821_01915
Type I restriction enzyme, R subunit.
  
     0.494
C821_01336
Heavy metal translocating P-type ATPase.
       0.465
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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