Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C821_01546Hypothetical protein. (341 aa)    
Predicted Functional Partners:
C821_01742
PTS system, lactose/cellobiose family IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
  
 0.652
C821_00852
PTS system, cellobiose-specific IIB component.
 
     0.637
C821_00851
PTS system, cellobiose-specific IIA component.
 
     0.614
C821_01547
Hypothetical protein.
       0.503
C821_01545
Hypothetical protein.
       0.457
C821_00778
Hypothetical protein.
  
     0.418
C821_01330
PTS system, sucrose-specific IIBC component.
 
   
 0.404
C821_00325
PTS system, lactose/cellobiose family IIC component.
 
  
 0.402
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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