C821_01682 protein (Lactobacillus sp. ASF360)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C821_01682

Nicotinate-nucleotide adenylyltransferase. (40 aa)

Predicted Functional Partners:

C821_01681

0.947

nadE

0.930

C821_00386

0.917

nadK

0.917

rsfS

0.909

C821_00157

0.904

C821_01422

0.899

C821_01678

0.800

tmcAL

0.800

C821_00312

0.712

Your Current Organism:

Lactobacillus sp. ASF360

NCBI taxonomy Id: 97137
Other names: L. sp. ASF360

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C821_00157	C821_00386	C821_00157	C821_00386	NAD-dependent deacetylase.	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	0.590
C821_00157	C821_01422	C821_00157	C821_01422	NAD-dependent deacetylase.	Hypothetical protein.	0.934
C821_00157	C821_01682	C821_00157	C821_01682	NAD-dependent deacetylase.	Nicotinate-nucleotide adenylyltransferase.	0.904
C821_00157	nadE	C821_00157	C821_00387	NAD-dependent deacetylase.	NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.	0.945
C821_00157	nadK	C821_00157	C821_01245	NAD-dependent deacetylase.	NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.942
C821_00157	rsfS	C821_00157	C821_01680	NAD-dependent deacetylase.	Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.446
C821_00312	C821_01682	C821_00312	C821_01682	Hypothetical protein.	Nicotinate-nucleotide adenylyltransferase.	0.712
C821_00386	C821_00157	C821_00386	C821_00157	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	NAD-dependent deacetylase.	0.590
C821_00386	C821_01422	C821_00386	C821_01422	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Hypothetical protein.	0.590
C821_00386	C821_01681	C821_00386	C821_01681	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Hypothetical protein.	0.684
C821_00386	C821_01682	C821_00386	C821_01682	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Nicotinate-nucleotide adenylyltransferase.	0.917
C821_00386	nadE	C821_00386	C821_00387	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.	0.952
C821_01422	C821_00157	C821_01422	C821_00157	Hypothetical protein.	NAD-dependent deacetylase.	0.934
C821_01422	C821_00386	C821_01422	C821_00386	Hypothetical protein.	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	0.590
C821_01422	C821_01682	C821_01422	C821_01682	Hypothetical protein.	Nicotinate-nucleotide adenylyltransferase.	0.899
C821_01422	nadE	C821_01422	C821_00387	Hypothetical protein.	NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.	0.933
C821_01422	nadK	C821_01422	C821_01245	Hypothetical protein.	NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.929
C821_01422	rsfS	C821_01422	C821_01680	Hypothetical protein.	Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.446
C821_01678	C821_01681	C821_01678	C821_01681	Hypothetical protein.	Hypothetical protein.	0.836
C821_01678	C821_01682	C821_01678	C821_01682	Hypothetical protein.	Nicotinate-nucleotide adenylyltransferase.	0.800