Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C821_01689Hypothetical protein. (230 aa)    
Predicted Functional Partners:
ecfA
Cobalt/nickel transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
  0.887
ecfA-2
Hypothetical protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
  0.872
C821_01471
Hypothetical protein.
  
 0.821
C821_01504
ABC transporter permease.
 
 
 0.817
C821_01327
Hypothetical protein.
 
 
  0.794
C821_00269
Hypothetical protein.
 
 
  0.779
C821_01690
Hypothetical protein.
     
 0.769
C821_01344
Hypothetical protein.
 
 
  0.765
C821_00139
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
    
 0.761
C821_00163
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
    
 0.761
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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