STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_01757YSIRK family gram-positive signal peptide. (3827 aa)    
Predicted Functional Partners:
C821_01902
LPXTG-domain-containing protein cell wall anchor domain protein.
  
     0.727
C821_01758
Hypothetical protein.
 
     0.714
C821_01762
LPXTG-domain-containing protein cell wall anchor domain protein.
  
     0.706
C821_01773
Hypothetical protein.
  
     0.607
C821_01636
IS605 OrfB family transposase.
  
 
   0.549
C821_01009
IS605 OrfB family transposase.
  
 
   0.547
C821_01789
Hypothetical protein.
  
 
   0.536
C821_01950
Hypothetical protein.
 
     0.529
C821_01767
YSIRK family gram-positive signal peptide.
  
     0.495
C821_00150
IS605 OrfB family transposase.
    
   0.476
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.