Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C821_01763Hypothetical protein. (2540 aa)    
Predicted Functional Partners:
C821_01765
LPXTG-domain-containing protein cell wall anchor domain protein.
  
     0.745
C821_01137
rib/alpha/Esp surface antigen.
  
   
 0.740
C821_00323
rib/alpha/Esp surface antigen.
  
     0.711
C821_00560
Hypothetical protein.
  
     0.697
C821_01823
Hypothetical protein.
  
     0.668
C821_01818
LPXTG-domain-containing protein cell wall anchor domain protein.
 
     0.612
C821_01323
Hypothetical protein.
  
     0.606
C821_00559
Hypothetical protein.
  
     0.585
C821_00242
Cadmium resistance transporter.
  
     0.562
C821_01136
rib/alpha/Esp surface antigen.
 
   
 0.520
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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