Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C821_01773Hypothetical protein. (310 aa)    
Predicted Functional Partners:
C821_01772
LPXTG-domain-containing protein cell wall anchor domain protein.
    
0.686
C821_01137
rib/alpha/Esp surface antigen.
  
     0.667
C821_01136
rib/alpha/Esp surface antigen.
 
   
 0.632
C821_01757
YSIRK family gram-positive signal peptide.
  
     0.607
C821_00858
Hypothetical protein.
  
     0.596
C821_01761
YSIRK family gram-positive signal peptide.
 
     0.564
C821_00323
rib/alpha/Esp surface antigen.
  
     0.561
C821_01123
LPXTG-domain-containing protein cell wall anchor domain protein.
 
     0.519
C821_01242
Hypothetical protein.
  
     0.459
C821_01771
YSIRK family gram-positive signal peptide.
 
    
0.406
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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