Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C821_01821Hypothetical protein. (517 aa)    
Predicted Functional Partners:
C821_01822
YSIRK family gram-positive signal peptide.
 
     0.821
C821_01404
Hypothetical protein.
  
     0.737
C821_01775
YSIRK family gram-positive signal peptide.
  
     0.676
C821_01820
Hypothetical protein.
 
    
0.664
C821_01523
Hypothetical protein.
  
     0.643
C821_00266
Hypothetical protein.
  
     0.640
C821_00291
Hypothetical protein.
  
     0.618
C821_00306
Transcriptional activator, Rgg/GadR/MutR family domain-containing protein.
  
     0.602
C821_01391
Hypothetical protein.
  
     0.558
C821_01355
Hypothetical protein.
  
     0.550
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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