STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_01822YSIRK family gram-positive signal peptide. (573 aa)    
Predicted Functional Partners:
C821_01820
Hypothetical protein.
 
     0.918
C821_01819
Hypothetical protein.
 
     0.884
C821_01821
Hypothetical protein.
 
     0.821
C821_01818
LPXTG-domain-containing protein cell wall anchor domain protein.
 
     0.774
C821_01404
Hypothetical protein.
 
    0.716
C821_01775
YSIRK family gram-positive signal peptide.
  
     0.713
C821_00291
Hypothetical protein.
 
     0.699
C821_00266
Hypothetical protein.
  
     0.669
C821_01823
Hypothetical protein.
 
     0.631
C821_01137
rib/alpha/Esp surface antigen.
 
     0.576
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.