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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_01950Hypothetical protein. (670 aa)    
Predicted Functional Partners:
C821_01951
Hypothetical protein.
 
     0.773
C821_01137
rib/alpha/Esp surface antigen.
 
  
 0.709
C821_01770
Hypothetical protein.
 
     0.700
C821_01772
LPXTG-domain-containing protein cell wall anchor domain protein.
     0.698
C821_01136
rib/alpha/Esp surface antigen.
 
 
 
 0.693
C821_00560
Hypothetical protein.
  
     0.633
metG
methionine-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
  0.632
C821_00323
rib/alpha/Esp surface antigen.
 
  
  0.597
C821_01768
LPXTG-domain-containing protein cell wall anchor domain protein.
 
     0.567
C821_01757
YSIRK family gram-positive signal peptide.
 
     0.529
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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