STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C821_01985Hypothetical protein. (160 aa)    
Predicted Functional Partners:
C821_00945
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.852
C821_01183
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
 
 0.554
C821_01504
ABC transporter permease.
  
  
 0.546
C821_00744
Hypothetical protein.
 
  
 0.488
C821_00230
Antibiotic transport system permease; Overlaps another CDS with the same product name.
  
    0.486
C821_01655
Hypothetical protein.
    
 0.480
C821_00152
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
  0.479
C821_01986
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.476
C821_00467
Hypothetical protein.
    
 0.461
frc
formyl-CoA transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily.
   
 
  0.461
Your Current Organism:
Lactobacillus sp. ASF360
NCBI taxonomy Id: 97137
Other names: L. sp. ASF360
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.