Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_00129Hypothetical protein. (336 aa)    
Predicted Functional Partners:
C820_00128
Hypothetical protein.
  
 0.994
C820_00127
Hypothetical protein.
 
  
 0.980
C820_00125
Hypothetical protein.
 
     0.802
C820_00124
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.705
C820_00126
Phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.626
C820_00123
Hypothetical protein.
       0.550
C820_01913
DctP family TRAP transporter solute receptor.
  
     0.530
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.513
C820_00122
Hypothetical protein.
 
     0.471
C820_01915
Hypothetical protein.
  
     0.453
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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