Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_00528Hypothetical protein. (238 aa)    
Predicted Functional Partners:
hisI
Hypothetical protein; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
  
  
 0.775
C820_00527
Hypothetical protein.
       0.668
C820_00529
Hypothetical protein.
       0.592
C820_00530
Hypothetical protein.
       0.543
ybeY
YbeY/UPF0054 family metalloprotein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
    0.482
C820_00526
ATP-dependent DNA helicase PcrA.
       0.476
C820_02820
DNA polymerase III, alpha subunit.
 
   
 0.467
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.465
hisB
Hypothetical protein.
  
  
 0.464
C820_00552
Hypothetical protein; Belongs to the SEDS family.
 
   
 0.462
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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