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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_00547Hypothetical protein. (195 aa)    
Predicted Functional Partners:
C820_01358
Hypothetical protein.
 
     0.772
C820_02827
TIGR02452 family protein.
 
     0.684
C820_01704
Hypothetical protein.
  
     0.679
C820_02195
Hypothetical protein.
  
     0.590
kptA
Hypothetical protein; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
     0.578
C820_00520
Hypothetical protein.
  
     0.564
C820_01705
Hypothetical protein.
  
     0.557
C820_02564
Hypothetical protein.
  
     0.542
C820_00001
Hypothetical protein.
  
     0.493
C820_00548
Hypothetical protein.
       0.486
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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