Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C820_00565 | C820_01092 | C820_00565 | C820_01092 | Hypothetical protein. | Methionine synthase. | 0.814 |
C820_00565 | C820_01732 | C820_00565 | C820_01732 | Hypothetical protein. | Hypothetical protein. | 0.757 |
C820_00565 | C820_02634 | C820_00565 | C820_02634 | Hypothetical protein. | Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.764 |
C820_00565 | C820_02658 | C820_00565 | C820_02658 | Hypothetical protein. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.953 |
C820_00565 | C820_02818 | C820_00565 | C820_02818 | Hypothetical protein. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.836 |
C820_00565 | dapB | C820_00565 | C820_02683 | Hypothetical protein. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.940 |
C820_00565 | dapF | C820_00565 | C820_00133 | Hypothetical protein. | Carbamoyl-phosphate synthase, large subunit; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family. | 0.840 |
C820_00565 | dapF-2 | C820_00565 | C820_00566 | Hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.984 |
C820_00565 | metK | C820_00565 | C820_02246 | Hypothetical protein. | S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.837 |
C820_00565 | rnfB | C820_00565 | C820_02267 | Hypothetical protein. | Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.752 |
C820_01092 | C820_00565 | C820_01092 | C820_00565 | Methionine synthase. | Hypothetical protein. | 0.814 |
C820_01092 | C820_01732 | C820_01092 | C820_01732 | Methionine synthase. | Hypothetical protein. | 0.536 |
C820_01092 | C820_02634 | C820_01092 | C820_02634 | Methionine synthase. | Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.942 |
C820_01092 | C820_02658 | C820_01092 | C820_02658 | Methionine synthase. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.929 |
C820_01092 | dapF | C820_01092 | C820_00133 | Methionine synthase. | Carbamoyl-phosphate synthase, large subunit; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family. | 0.716 |
C820_01092 | dapF-2 | C820_01092 | C820_00566 | Methionine synthase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.431 |
C820_01092 | metK | C820_01092 | C820_02246 | Methionine synthase. | S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.965 |
C820_01092 | rnfB | C820_01092 | C820_02267 | Methionine synthase. | Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.963 |
C820_01732 | C820_00565 | C820_01732 | C820_00565 | Hypothetical protein. | Hypothetical protein. | 0.757 |
C820_01732 | C820_01092 | C820_01732 | C820_01092 | Hypothetical protein. | Methionine synthase. | 0.536 |
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