Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_00720DctP family TRAP transporter solute receptor. (348 aa)    
Predicted Functional Partners:
C820_00722
Hypothetical protein.
 
 
 0.987
C820_00721
TRAP transporter, DctM subunit.
 
 
 0.983
C820_01915
Hypothetical protein.
 
 
 0.953
C820_01916
TRAP transporter, DctM subunit.
 
 
 0.937
C820_01913
DctP family TRAP transporter solute receptor.
  
  
 
0.927
C820_00723
Hypothetical protein.
 
     0.721
C820_00705
Hypothetical protein.
   
 
 0.618
C820_01565
Hypothetical protein.
   
 
 0.618
C820_00719
Hypothetical protein.
       0.584
C820_00128
Hypothetical protein.
  
     0.461
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.