Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C820_00893 | C820_00896 | C820_00893 | C820_00896 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Hemolysin TlyA family protein. | 0.793 |
C820_00893 | C820_00898 | C820_00893 | C820_00898 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Hypothetical protein. | 0.649 |
C820_00893 | C820_00899 | C820_00893 | C820_00899 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Hypothetical protein; Belongs to the FPP/GGPP synthase family. | 0.697 |
C820_00893 | argR | C820_00893 | C820_00894 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Arginine repressor; Regulates arginine biosynthesis genes. | 0.839 |
C820_00893 | dxs | C820_00893 | C820_00897 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.774 |
C820_00893 | nadK | C820_00893 | C820_00895 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Hypothetical protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.787 |
C820_00893 | xseA | C820_00893 | C820_00901 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.840 |
C820_00896 | C820_00893 | C820_00896 | C820_00893 | Hemolysin TlyA family protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.793 |
C820_00896 | C820_00898 | C820_00896 | C820_00898 | Hemolysin TlyA family protein. | Hypothetical protein. | 0.795 |
C820_00896 | C820_00899 | C820_00896 | C820_00899 | Hemolysin TlyA family protein. | Hypothetical protein; Belongs to the FPP/GGPP synthase family. | 0.876 |
C820_00896 | argR | C820_00896 | C820_00894 | Hemolysin TlyA family protein. | Arginine repressor; Regulates arginine biosynthesis genes. | 0.868 |
C820_00896 | dxs | C820_00896 | C820_00897 | Hemolysin TlyA family protein. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.922 |
C820_00896 | nadK | C820_00896 | C820_00895 | Hemolysin TlyA family protein. | Hypothetical protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.933 |
C820_00896 | xseA | C820_00896 | C820_00901 | Hemolysin TlyA family protein. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.741 |
C820_00898 | C820_00893 | C820_00898 | C820_00893 | Hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.649 |
C820_00898 | C820_00896 | C820_00898 | C820_00896 | Hypothetical protein. | Hemolysin TlyA family protein. | 0.795 |
C820_00898 | C820_00899 | C820_00898 | C820_00899 | Hypothetical protein. | Hypothetical protein; Belongs to the FPP/GGPP synthase family. | 0.758 |
C820_00898 | argR | C820_00898 | C820_00894 | Hypothetical protein. | Arginine repressor; Regulates arginine biosynthesis genes. | 0.736 |
C820_00898 | dxs | C820_00898 | C820_00897 | Hypothetical protein. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.756 |
C820_00898 | nadK | C820_00898 | C820_00895 | Hypothetical protein. | Hypothetical protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.756 |
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