STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C820_01005PBSX family phage terminase, large subunit. (415 aa)    
Predicted Functional Partners:
C820_01004
SPP1 family phage portal protein.
 
  
 0.938
C820_01002
Hypothetical protein.
 
    0.902
C820_00222
Hypothetical protein.
 
  
 0.871
C820_01006
Hypothetical protein.
  
  
 0.846
C820_00238
SPP1 family phage portal protein.
 
  
 0.791
C820_00997
Hypothetical protein.
 
  
 0.786
C820_00989
Hypothetical protein.
 
  
 0.732
C820_01003
Hypothetical protein.
       0.732
C820_00239
SPP1 gp7 family phage head morphogenesis protein.
 
     0.730
C820_00224
Hypothetical protein.
 
     0.721
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.