Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C820_00143 | C820_00461 | C820_00143 | C820_00461 | Hypothetical protein. | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.881 |
C820_00143 | C820_00558 | C820_00143 | C820_00558 | Hypothetical protein. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 0.764 |
C820_00143 | C820_01330 | C820_00143 | C820_01330 | Hypothetical protein. | Hypothetical protein. | 0.881 |
C820_00143 | C820_01434 | C820_00143 | C820_01434 | Hypothetical protein. | Glutamate synthase (NADPH), homotetrameric. | 0.884 |
C820_00143 | C820_01688 | C820_00143 | C820_01688 | Hypothetical protein. | Hypothetical protein. | 0.890 |
C820_00143 | C820_02183 | C820_00143 | C820_02183 | Hypothetical protein. | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.878 |
C820_00143 | C820_02658 | C820_00143 | C820_02658 | Hypothetical protein. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.953 |
C820_00143 | leuB | C820_00143 | C820_01103 | Hypothetical protein. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.877 |
C820_00143 | rnfB | C820_00143 | C820_02267 | Hypothetical protein. | Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.752 |
C820_00461 | C820_00143 | C820_00461 | C820_00143 | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | Hypothetical protein. | 0.881 |
C820_00461 | C820_00558 | C820_00461 | C820_00558 | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 0.788 |
C820_00461 | C820_01330 | C820_00461 | C820_01330 | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | Hypothetical protein. | 0.873 |
C820_00461 | C820_01688 | C820_00461 | C820_01688 | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | Hypothetical protein. | 0.881 |
C820_00461 | C820_02183 | C820_00461 | C820_02183 | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.887 |
C820_00461 | C820_02658 | C820_00461 | C820_02658 | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.955 |
C820_00461 | rnfB | C820_00461 | C820_02267 | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.861 |
C820_00558 | C820_00143 | C820_00558 | C820_00143 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | Hypothetical protein. | 0.764 |
C820_00558 | C820_00461 | C820_00558 | C820_00461 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.788 |
C820_00558 | C820_01330 | C820_00558 | C820_01330 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | Hypothetical protein. | 0.764 |
C820_00558 | C820_01434 | C820_00558 | C820_01434 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | Glutamate synthase (NADPH), homotetrameric. | 0.773 |
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