Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_01432Hypothetical protein. (202 aa)    
Predicted Functional Partners:
C820_02477
Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.925
C820_01756
Lactoylglutathione lyase.
  
 0.915
C820_02307
Hypothetical protein.
   
 0.908
C820_01433
Hypothetical protein.
  
    0.689
C820_00991
Hypothetical protein.
  
 
  0.684
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
     
  0.661
rplJ
Hypothetical protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
     
  0.651
C820_01434
Glutamate synthase (NADPH), homotetrameric.
       0.610
C820_01570
Hypothetical protein.
     
 0.594
C820_02749
Polysaccharide pyruvyl transferase CsaB.
     
 0.594
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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