STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (497 aa)    
Predicted Functional Partners:
C820_01527
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.997
C820_01526
Hypothetical protein.
 
 
 0.971
C820_01523
Simple sugar transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.693
C820_01524
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.689
C820_01522
Simple sugar transport system ATP-binding protein.
 
  
 0.684
C820_00296
PTS system, Fru family, IIC component.
   
  
 0.641
C820_01521
Hypothetical protein.
 
  
 0.582
C820_01175
Hypothetical protein; Belongs to the GHMP kinase family.
    
 0.544
C820_01518
Two-component system, response regulator YesN.
 
  
  0.492
tal
Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
  
 0.473
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.