Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_01855Hypothetical protein. (222 aa)    
Predicted Functional Partners:
C820_01853
Type I restriction-modification system, M subunit.
 
 0.989
C820_00155
Type I restriction-modification system, M subunit.
 
 0.967
C820_01856
HsdR family type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.951
C820_00117
Type I restriction enzyme M protein.
  
 0.904
C820_02049
Type I restriction-modification system, M subunit.
  
 0.904
C820_00338
Hypothetical protein.
 
  0.832
C820_00159
HsdR family type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.821
C820_00002
Hypothetical protein.
  
  0.813
C820_01182
Hypothetical protein.
  
  0.809
C820_00120
Hypothetical protein.
  
 0.747
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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