STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C820_01899Type IV secretion system protein VirD4. (613 aa)    
Predicted Functional Partners:
C820_01894
Hypothetical protein.
 
  
 0.789
C820_01955
Hypothetical protein.
 
  
 0.780
C820_01901
Hypothetical protein.
 
     0.778
C820_02861
Hypothetical protein.
 
  
 0.777
C820_01898
Hypothetical protein.
 
     0.771
C820_01900
Hypothetical protein.
       0.771
C820_01956
Hypothetical protein.
 
  
 0.769
C820_02859
Hypothetical protein.
 
     0.738
C820_01892
Hypothetical protein.
 
     0.735
C820_02856
Hypothetical protein.
 
     0.735
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.