Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_01899Type IV secretion system protein VirD4. (613 aa)    
Predicted Functional Partners:
C820_01894
Hypothetical protein.
 
  
 0.785
C820_01901
Hypothetical protein.
 
     0.778
C820_01955
Hypothetical protein.
 
  
 0.777
C820_02861
Hypothetical protein.
 
  
 0.773
C820_01898
Hypothetical protein.
 
     0.770
C820_01900
Hypothetical protein.
       0.768
C820_01956
Hypothetical protein.
 
  
 0.766
C820_02859
Hypothetical protein.
 
     0.737
C820_01892
Hypothetical protein.
 
     0.733
C820_02856
Hypothetical protein.
 
     0.733
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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