Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C820_01941Hypothetical protein. (117 aa)    
Predicted Functional Partners:
C820_01942
Hypothetical protein.
     0.896
C820_02658
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
 
   
 0.767
C820_01939
Hypothetical protein.
       0.728
C820_00991
Hypothetical protein.
  
  
 0.656
C820_01940
Hypothetical protein.
      0.644
C820_01732
Hypothetical protein.
 
   
 0.588
Your Current Organism:
Clostridium sp. ASF356
NCBI taxonomy Id: 97138
Other names: C. sp. ASF356
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